大阪大学大学院 情報科学研究科 代謝情報工学講座 清水浩研究室

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松田史生 (Fumio Matsuda)

大阪大学大学院情報科学研究科代謝情報工学研究室准教授[研究者総覧][KAKEN]

研究テーマ

  • イソブタノール生産酵母の開発
  • 微生物代謝経路の代謝シミュレーション
  • 中心代謝産物の代謝プロファイル分析法の開発
  • 代謝フラックス解析
  • 植物バイオマスの評価
  • 質量分析データ解析のインフォマティクス

連絡先

〒565-0871 大阪府吹田市山田丘1-5 大阪大学大学院情報科学研究科代謝情報工学研究室

Tel: 06-6879-7432

ブログ

代謝情報工学は舟でゆく

経歴

昭和49年11月3日生
平成14年3月25日

京都大学農学研究科応用生命科学専攻博士課程修了
天然物有機化学、植物二次代謝、LC-MS

平成14年4月1日

日本学術振興会特別研究員PD
代謝フラックス解析

平成15年4月1日

科学技術振興機構CREST, "植物の機能と制御" 研究員
LCMSメタボロミクス

平成18年10月1日

理化学研究所植物科学研究センターメタボローム基盤研究グループ研究員(現在客員研究員兼任
植物メタボロミクス、質量分析データのインフォマティクス

平成21年10月1日

神戸大学自然科学系先端融合研究環重点研究部准教授
酵母の代謝工学

平成24年4月1日~現在

理化学研究所バイオマス工学研究プログラム客員研究員(兼任)
バイオマス評価法の確立

平成24年10月1日~現在

大阪大学大学院情報科学研究科バイオ情報工学専攻准教授
代謝工学、代謝フラックス解析、代謝シミュレーション

Publications

  1. 清水浩、松田史生、戸谷吉博(2015) 代謝デザインと13C同位体標識を用いた代謝フラックス解析の物質生産への応用. 化学と生物. 53(7), 455-461
  2. Shuhei Noda, Tomokazu Shirai, Keiichi Mochida, Fumio Matsuda, Sachiko Oyama, Mami Okamoto, Akihiko Kondo Evaluation of Brachypodium distachyon L-Tyrosine Decarboxylase Using L-Tyrosine Over-Producing Saccharomyces cerevisiae. PLoS ONE 10(5): e0125488. doi:10.1371/journal.pone.0125488
  3. Sasaki,K., Okamoto, M., Shirai, T., Tsuge, Y., Teramura, H., Sasaki, D., Kawaguchi, H., Hasunuma, T., Ogino, C., Matsuda, F., Kikuchi, J., Kondo, A. (2015) Precipitate obtained following membrane separation of hydrothermally pretreated rice straw liquid revealed by 2D NMR to have high lignin content., Biotechnology for Biofuels, in press
  4. Nobuyuki Okahashi, Susumu Kohno, Shunsuke Kitajima, Fumio Matsuda, Chiaki Takahashi, Hiroshi Shimizu (2015) Metabolic characterization of cultured mammalian cells by mass balance analysis, tracer labeling experiments and computer-aided simulations. J. Biosci. Bioeng. In press
  5. Kengo Ida, Jun Ishii, Fumio Matsuda, Takashi Kondo, Akihiko Kondo (2015) Eliminating the isoleucine biosynthetic pathway to reduce competitive carbon outflow during isobutanol production by Saccharomyces cerevisiae. Microbial Cell Factories. In press
  6. Kenshi Hayakawa, Shuichi Kajihata, Fumio Matsuda, Hiroshi Shimizu (2015) 13C-metabolic flux analysis in S-adenosyl-L-methionine production by Saccharomyces cerevisiae. J. Biosci. Bioeng. In press
  7. Shunsuke Nishino, Nobuyuki Okahashi, Fumio Matsuda, and Hiroshi Shimizu (2015) Absolute quantitation of glycolytic intermediates reveals thermodynamic shifts in Saccharomyces cerevisiae strains lacking PFK1 or ZWF1 genes . J. Biosci. Bioeng. In press
  8. Shuichi Kajihata, Fumio Matsuda, Mika Yoshimi, Kenshi Hayakawa, Chikara Furusawa, Akihisa Kanda and Hiroshi Shimizu (2015) 13C-based metabolic flux analysis of Saccharomyces cerevisiae with a reduced Crabtree effect. . J. Biosci. Bioeng. In press
  9. Fumio Matsuda, Ryo Nakabayashi, Zhigang Yang, Yozo Okazaki, Jun-ichi Yonemaru, Kaworu Ebana, Masahiro Yano,and Kazuki Saito (2014) Metabolome-genome-wide association study (mGWAS) dissects genetic architecture for generating natural variation in rice secondary metabolism. The Plant Journal. In press
  10. Fumio Matsuda, Tairo Ogura, Atsumi Tomita, Ichiro Hirano, and Hiroshi Shimizu (2014) NanoLC-MRM based quantitative platform for analyzing multiple enzymes associated with central metabolic pathways of Saccharomyces cerevisiae using ultra-fast mass spectrometry. J. Biosci. Bioeng. In press
  11. 松田史生、吉川勝徳、清水浩(2014) 代謝シミュレーションによる細胞内代謝のデザインと工学的応用. 生物工学会誌. 92(11), 593-5
  12. Takaaki Nishioka, Takeshi Kasama, Tomoya Kinumi, Hidefumi Makabe, Fumio Matsuda, Daisuke Miura, Masahiro Miyashita, Takemichi Nakamura, Ken Tanaka, Atsushi Yamamoto (2014) Winners of CASMI2013: Automated Tools and Challenge Data. Mass Spectrometry. 3(S2), S0039
  13. Fumio Matsuda (2014) Rethinking mass spectrometry-based small molecule identification strategies in metabolomics. Mass Spectrometry. 3(S2), S0038
  14. Tsubasa Nakajima, Shuichi Kajihata, Katsunori Yoshikawa, Fumio Matsuda, Chikara Furusawa, Takashi Hirasawa,and Hiroshi Shimizu (2014) Integrated Metabolic Flux and Omics Analysis of Synechocystis sp. PCC 6803 under Mixotrophic and Photoheterotrophic Conditions. Plant and Cell Physiology. 55(9), 1605-12
  15. Shuichi Kajihata, Chikara Furusawa, Fumio Matsuda, Hiroshi Shimizu (2014) OpenMebius: An open source software for isotopically nonstationary 13C-based metabolic flux analysis. BioMed Research International. 2014, 627014
  16. Jun Ishii, Takashi Kondo, Harumi Makino, Akira Ogura, Fumio Matsuda and Akihiko Kondo (2014) Three gene expression vector sets for concurrently expressing multiple genes in Saccharomyces cerevisiae. FEMS Yeast research. 14(3), 399-411.
  17. Ancy Joseph, Shimpei Aikawa, Kengo Sasaki, Fumio Matsuda, Tomohisa Hasunuma, and Akihiko Kondo (2014) Increased biomass production and glycogen accumulation in apcE gene deleted Synechocystis sp. PCC 6803. AMB Express. 4, 17.
  18. 松田史生 (2014) 代謝シミュレーションやるなら今でしょ. 生物工学会誌. 92(4), 190
  19. Tsutomu Tanaka, Sayoko Matsumoto, Mari Yamada, Ryosuke Yamada, Fumio Matsuda, Akihiko Kondo (2013) Display of active beta-glucosidase on the surface of Schizosaccharomyces pombe cells using novel anchor proteins. Appl. Microbiol. Biotechnol.97(10), 4343-4352.
  20. Fumio Matsuda, Jun Ishii, Takashi Kondo, Kengo Ida, Hironori Tezuka and Akihiko Kondo (2013)Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance. Microbial Cell Factories. 12,119.
  21. Hiroshi Teramura, Tomoko Oshima, Fumio Matsuda, Kengo Sasaki, Chiaki Ogino, Masanori Yamasaki, Akihiko Kondo (2013) Glucose content in the liquid hydrolysate after dilute acid pretreatment is affected by the starch content in rice straw. Bioresource Technol. 149, 520-524.
  22. Fumio Matsuda, Hiroshi Tsugawa, Eiichiro Fukusaki (2013) Method for assessing the statistical significance of mass spectral similarities using basic local alignment search tool statistics. Anal. Chem. 85(17), 8291-8217.
  23. Shimpei Aikawa, Ancy Joseph, Ryosuke Yamada, Yoshihiro Izumi, Takahiro Yamagishi, Fumio Matsuda, Hiroshi Kawai, Jo-Shu Chang, Tomohisa Hasunumabch and Akihiko Kondo (2013) Direct conversion of Spirulina to ethanol without pretreatment or enzymatic hydrolysis processes. Energy & Environmental Science 6(6),1844-1849.
  24. Joseph G. Dubouzet, Fumio Matsuda, Atsushi Ishihara, Hisashi Miyagawa, and Kyo Wakasa (2013) Production of indole alkaloids by metabolic engineering of the tryptophan pathway in rice. Plant Biotechnol. J. 11(9). 1103-11.
  25. Yoshihiro Izumi, Shimpei Aikawa, Fumio Matsuda, Tomohisa Hasunuma, and Akihiko Kondo (2013) Aqueous size-exclusion chromatographic method for the quantification of cyanobacterial native glycogen. Journal of Chromatography B. 930, 90-97.
  26. Hiroko Kato, Fumio Matsuda, Ryosuke Yamada, Kento Nagata, Tomokazu Shirai, Tomohisa Hasunuma and Akihiko Kondo (2013) Cocktail δ-integration of xylose assimilation genes for efficient ethanol production from xylose in Saccharomyces cerevisiae. J. Biosci. Bioeng. 116(3), 333-336.
  27. Tetsuya Sakurai, Yutaka Yamada, Yuji Sawada, Fumio Matsuda, Kenji Akiyama, Kazuo Shinozaki, Masami Yokota Hirai and Kazuki Saito (2013) PRIMe Update: Innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. Plant Cell Pysiol. 54(2), e5.
  28. Ancy Joseph, Shimpei Aikawa, Kengo Sasaki, Yota Tsuge, Fumio Matsuda, Tsutomu Tanaka and Akihiko Kondo (2013) Utilization of lactic acid bacterial genes in Synechocystis sp. PCC 6803 for the production of lactic acid. Biosci. Biotech. Biochem. 77(5), 966-970.
  29. Fumio Matsuda, Tomokazu Shirai, Jun Ishii, and Akihiko Kondo (2013) Regulation of central carbon metabolism in Saccharomyces cerevisiae by metabolic inhibitors. J. Biosci. Bioeng. 116(1), 59-64.
  30. Akihiko Kondo, Jun Ishii, Kiyotaka Y. Hara, Tomohisa Hasunuma, and Fumio Matsuda (2013). Development of microbial cell factories for bio-refinery through synthetic bioengineering. J Biotechnol.163(2):204-16.
  31. Sastia P. Putri, Yasumune Nakayama, Fumio Matsuda, Takato Uchikata, Shizu Kobayashi, Atsuki Matsubara, Eiichiro Fukusaki (2013) Current metabolomics: Practical applications. J. Biosci. Bioeng. 115(6), 579-89.
  32. 松田史生,岡咲洋三,斉藤和季(2013) メタボローム–QTL解析を用いた玄米代謝物組成にかかわる自然変異の探索. 化学と生物. 51(12), 792-794.
  33. Hiroaki Saika, Akira Oikawa, Ryo Nakabayashi, Fumio Matsuda, Kazuki Saito, Seiichi Toki (2012) Changes in primary and secondary metabolite levels in response to gene targeting-mediated site-directed mutagenesis of the anthranilate synthase gene in rice. Metabolites. 2(4), 1123-1138.
  34. Tomokazu Shirai, Fumio Matsuda, Mami Okamoto, Akihiko Kondo (2012) Evaluation of control mechanisms for Saccharomyces cerevisiae central metabolic reactions using metabolome data of eight single-gene deletion mutants. Appl. Microbiol. Biotechnol.97(8), 3567-3577.
  35. Kengo Sasaki, Fumio Matsuda, Tomohisa Hasunuma, Chiaki Ogino, Masakatsu Urairi, Kazuhito Yoshida, Akihiko Kondo (2013) Ability of a perfluoropolymer membrane to tolerate by-products of ethanol fermentation broth from dilute acid-pretreated rice straw. Biochemical Engineering Journal.70, 135-139.
  36. Fumio Matsuda, Takashi Kondo, Kengo Ida, Hironori Tezuka, Jun Ishii, and Akihiko Kondo (2012) Construction of an artificial pathway for isobutanol biosynthesis in the cytosol of Saccharomyces cerevisiae. Biosci. Biotech. Biochem. 76(11), 2139-2149
  37. Hiroyuki Suga, Fumio Matsuda, Tomohisa Hasunuma, Jun Ishii, and Akihiko Kondo (2013) Implementation of a transhydrogenase-like shunt to counter redox imbalance during xylose fermentation in Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 97(2), 1669-1678
  38. Yuji Sawada, Ryo Nakabayashi, Yutaka Yamada, Makoto Suzuki, Muneo Sato, Akane Sakata, Fumio Matsuda, Toshio Aoki, Masami Yokota Hirai, and Kazuki Saito (2012) RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS based data resource and database. Phytochemistry. 82, 38-45.
  39. Fumio Matsuda, Yozo Okazaki, Akira Oikawa, Miyako Kusano, Ryo Nakabayashi, Jun Kikuchi, Jun-Ichi Yonemaru, Kaworu Ebana, Masahiro Yano, and Kazuki Saito (2012) Dissection of genotype–phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J. 70(4), 624-36
  40. Takashi Kondo, Hiroyuki Tezuka, Jun Ishi, Fumio Matsuda, Chiaki Ogino, and Akihiko Kondo (2012) Genetic engineering to enhance the Ehrlich pathway and alter carbon flux for increased isobutanol production from glucose by Saccharomyhces cerevisiae. J. Biotechnol. 159(1-2), 32-37
  41. Hiroko Kato, Yoshihiro Izumi, Tomohisa Hasunuma, Fumio Matsuda, and Akihiko Kondo (2012) Widely targeted metabolic profiling analysis of yeast central metabolites. J. Biosci. Bioeng. 113(5), 665-673
  42. Shimpei Aikawa, Yoshihiro Izumi, Fumio Matsuda, Tomohisa Hasunuma, Jo-Shu Chang, and Akihiko Kondo (2012) Synergistic enhancement of glycogen production in Arthrospira platensis by optimization of light intensity and nitrate supply. Bioresource Technology 108, 211-215
  43. Henning Redestig, Miyako Kusano, Kaworu Ebana Makoto Kobayashi, Akira Oikawa, Yozo Okazaki, Fumio Matsuda, Masanori Arita, Naoko Fujita, and Kazuki Saito (2011) Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics. BMC Systems Biology 5, 176
  44. Hideyo Yoshida, Kiyotaka Y. Hara, Kentaro Kiriyama, Hideki Nakayama, Fumiyoshi Okazaki, Fumio Matsuda, Chiaki Ogino, Hideki Fukuda, and Akihiko Kondo (2011) Enzymatic glutathione production using metabolically engineered Saccharomyces cerevisiae as a whole-cell biocatalyst. Appl. Microbiol. Biotechnol. 91(4), 1001-1006
  45. Keiko Yonekura-Sakakibara, Atsushi Fukushima, Ryo Nakabayashi, Kousuke Hanada, Fumio Matsuda, Satoko Sugawara, Eri Inoue, Takashi Kuromori, Takuya Ito, Kazuo Shinozaki, Bunyapa Wangwattana, Mami Yamazaki, and Kazuki Saito (2012) Two Glycosyltransferases Involved in Anthocyanin Modification Delineated by Transcriptome Independent Component Analysis in Arabidopsis thaliana. Plant J. 69(1), 154-167
  46. Thierry Joët, Eleanor Wurtzel, Fumio Matsuda, Kazuki Saito, and Stéphane Dussert (2012) Coupled transcript-metabolite profiling: towards system biology approaches to unravel regulation of seed secondary metabolism, in Seed development: OMICS Technologies toward Improvement of Seed Quality and Crop Yield, (Ganesh K. Agrawal, ed.) SPRINGER (The Netherlands),pp 367-385.
  47. 松田史生、近藤昭彦. 2012. 「第8章 システムズ代謝工学および細胞表層工学による微生物工場開発」生命システム工学、田口精一編、化学同人pp147-176.
  48. Fumio Matsuda, Chikara Furusawa, Takashi Kondo, Jun Ishii, Hiroshi Shimizu, and Akihiko Kondo (2011) Engineering strategy of yeast metabolism for higher alcohol production. Microbial Cell Factories 10, 70
  49. Akira Oikawa, Fumio Matsuda, Munehiro Kikuyama, Tetsuro Mimura, and Kazuki Saito (2011) Metabolomics of a single vacuole reveals metabolic dynamism in an alga Chara australis. Plant Physiol. 157(1), 544-551
  50. Fumio Matsuda, Ryo Nakabayashi, Yuji Sawada, Makoto Suzuki, Masami Y. Hirai, Shigehiko Kanaya, and Kazuki Saito (2011) Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity. Front. Plant Sci. 2, 40
  51. Fumio Matsuda, Masahiro Hayashi, and Akihiko Kondo (2011) Comparative profiling analysis of central metabolites in Euglena gracilis under different cultivation conditions. Biosci. Biotech. Biochem. 75(11), 2253-2256
  52. Akira Oikawa, Takao Otsuka, Yusuke Jikumaru, Shinjiro Yamaguchi, Fumio Matsuda, Ryo Nakabayashi, Tadashi Takashina, Kanji Isuzugawa, Kazuki Saito, and Katsuhiro Shiratake (2011) Effects of freeze-drying of samples on metabolite levels in metabolome analyses. J Sep. Sci. 34(24), 3561-3567
  53. Tomoya Sanda, Tomohisa Hasunuma, Fumio Matsuda, and Akihiko Kondo (2011) Repeated-batch fermentation of lignocellulosic hydrolysate to ethanol using a hybrid Saccharomyces cerevisiae strain metabolically engineered for tolerance to acetic and formic acids. Bioresour Technol. 102(17), 7912-7924
  54. Miyako Kusano, Takayuki Tohge, Atsushi Fukushima, Makoto Kobayashi, Naomi Hayashi, Hitomi Otsuki, Youichi Kondou, Hiroto Goto, Mika Kawashima, Fumio Matsuda, Rie Niida, Minami Matsui, Kazuki Saito, and Alisdair R. Fernie (2011) Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. Plant J. 67(2), 354-69
  55. Hiroaki Saika, Akira Oikawa, Fumio Matsuda, Haruko Onodera, Kazuki Saito, and Seiichi Toki (2011) Application of gene targeting to designed mutation breeding of high-tryptophan rice. Plant Physiol. 156(3), 1269-1277
  56. Fumio Matsuda, Masanori Yamasaki, Tomohisa Hasunuma, Chiaki Ogino, and Akihiko Kondo (2011) Variation in biomass property among rice diverse cultivars. Biosci, Biotechnol, Biochem. 75(8), 1603-5
  57. Miyako Kusano, Henning Redestig, Tadayoshi Hirai, Akira Oikawa, Fumio Matsuda, Atsushi Fukushima, Masanori Arita, Shin Watanabe, Megumu Yano, Kyoko Hiwasa-Tanase, Hiroshi Ezura, and Kazuki Saito (2011) Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment. PLoS ONE 6(2), e16989
  58. Tomohisa Hasunuma, Kyung-mo Sung, Tomoya Sanda, Kazuya Yoshimura, Fumio Matsuda, and Akihiko Kondo (2011) Efficient fermentation of xylose to ethanol at high formic acid concentrations by metabolically engineered Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 90(3), 997-1004
  59. Yozo Okazaki, Akira Oikawa, Miyako Kusano, Fumio Matsuda and Kazuki Saito (2011) Metabolomics in Plant Biotechnology, in Plant Metabolism and Biotechnology (Hiroshi Ashihara, Alan Crozier, Atsushi Komamine ed.) WILEY (England). pp 373-388
  60. Hisayuki Horai, Masanori Arita, Shigehiko Kanaya, Yoshito Nihei, Tasuku Ikeda, Kazuhiro Suwa, Yuya Ojima, Kenichi Tanaka, Satoshi Tanaka, Ken Aoshima, Yoshiya Oda, Yuji Kakazu, Miyako Kusano, Takayuki Tohge, Fumio Matsuda, Yuji Sawada, Masami Yokota Hirai, Hiroki Nakanishi, Kazutaka Ikeda, Naoshige Akimoto, Takashi Maoka, Hiroki Takahashi, Takeshi Ara, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Steffen Neumann, Takashi Iida, Ken Tanaka, Kimito Funatsu, Fumito Matsuura,Tomoyoshi Soga, Ryo Taguchi, Kazuki Saito, and Takaaki Nishioka (2010) MassBank: a public repository for sharing mass spectral data for life sciences. J. Mass Spec. 45(7), 703-714
  61. Yasutaka Nishiyama, Choong-Soo Yun, Fumio Matsuda, Tadamasa Sasaki, Kazuki Saito, and Yuzuru Tozawa (2010) Expression of bacterial tyrosine ammonia-lyase creates a novel p-coumaric acid pathway in the biosynthesis of phenylpropanoids in Arabidopsis. Planta 232(1), 209-218
  62. Henning Redestig, Miyako Kusano, Atsushi Fukushima, Fumio Matsuda, Kazuki Saito, and Masanori Arita (2010) Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinformatics 11, 214
  63. Satoshi Kitamura, Fumio Matsuda, Takayuki Tohge, Keiko Sakakibara, Mami Yamazaki, Kazuki Saito, and Issay Narumi (2010) Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of flavonoid accumulation mutants of Arabidopsis thaliana Plant J. 62(4), 549-559
  64. Masao Ishimoto, Shaikh M. Rahman, Moemen S. Hanafy, Mutasim M. Khalafalla, Hany A. El-Shemy, Yumi Nakamoto, Yoichi Kita, Kojiro Takanashi, Fumio Matsuda, Yoshihiro Murano, Tomoko Funabashi, Hisashi Miyagawa, and Kyo Wakasa (2010) Evaluation of amino acid content and nutritional quality of transgenic soybean seeds with high-level tryptophan accumulation. Molecular Breeding 25(2), 313-326
  65. Fumio Matsuda, Masami Y. Hirai, Eriko Sasaki, Kenji Akiyama, Keiko Yonekura-Sakakibara, Nicholas J. Provart, Tetsuya Sakurai, Yukihisa Shimada, and Kazuki Saito (2010) AtMetExpress development: A phytochemical atlas of Arabidopsis thaliana development. Plant Physiol. 152(2), 566-578
  66. Fumio Matsuda, Atsushi Ishihara, Kojiro Takanashi, Keiko Morino, Haruna Miyazawa, Kyo Wakasa and Hisashi Miyagawa (2010) Metabolic profiling analysis of genetically modified rice seedlings that overproduce tryptophan Plant Biotechnol. 27(1), 17-27
  67. Kazuki Saito and Fumio Matsuda (2010). Metabolomics for functional genomics, systems biology, and biotechnology. Annual Reviews in Plant Biology, 61, 463-489.
  68. Fumio Matsuda, Henning Redestig, Yuji Sawada, Yoko Shinbo, Masami Yokota Hirai, Shigehiko Kanaya, and Kazuki Saito (2009) Visualization of metabolite identifier information. Plant Biotechnol. 26(5), 479-483
  69. Grit Rubin, Takayuki Tohge, Fumio Matsuda, Kazuki Saito, and Wolf-Rüdiger Scheible (2009) Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis. Plant Cell 21(11), 3567-3584.
  70. Fumio Matsuda, Yoko Shinbo, Akira Oikawa, Masami Yokota Hirai, Oliver Fiehn, Shigehiko Kanaya, and Kazuki Saito (2009) Assessment of metabolome annotation quality: A method for evaluating the false discovery rate of elemental composition searches. PLoS ONE 4(10), e7490
  71. Yozo Okazaki, Mie Shimojima, Yuji Sawada, Kiminori Toyooka, Tomoko Narisawa, Keiichi Mochida, Hironori Tanaka, Fumio Matsuda, Akiko Hirai, Masami Yokota Hirai, Hiroyuki Ohta and Kazuki Saito (2009) A chloroplastic UDP-glucose pyrophosphorylase from arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell 21(3), 892-909
  72. Fumio Matsuda, Keiko Yonekura-Sakakibara, Rie Niida, Takashi Kuromori, Kazuo Shinozaki, and Kazuki Saito (2009) MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J. 57(3), 555-577
  73. 松田史生「植物ゲノム科学辞典」 (2009)「クマリン」pp 104, 「フェニルプロパノイド」pp 289-291を分担(日本語)
  74. Keiko Yonekura-Sakakibara, Takayuki Tohge, Fumio Matsuda, Ryo Nakabayashi, Hiromitsu Takayama, Rie Niida, Akiko Watanabe-Takahashi, Eri Inoue, and Kazuki Saito (2008) Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene–Metabolite Correlations in Arabidopsis. Plant Cell 20(8), 2160-2176
  75. Tetsuya Yamada, Fumio Matsuda, Koji Kasai, Shuichi Fukuoka, Keisuke Kitamura, Yuzuru Tozawa, Hisashi Miyagawa, and Kyo Wakasa (2008) Mutation of an enzyme that functions in phenylalanine biosynthesis results in accumulation of phenylalanine and tryptophan in rice: Plant Cell 20(5),1316-1329
  76. Atsushi Ishihara, Yumi Hashimoto, Chihiro Tanaka, Joseph G. Dubouzet, Takahito Nakao, Fumio Matsuda, Takaaki Nishioka, Hisashi Miyagawa, and Kyo Wakasa (2008) The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production. Plant J. 54(3), 481-495
  77. Akira Oikawa, Fumio Matsuda, Miyako Kusano, Yozo Okazaki, and Kazuki Saito (2008) Rice Metabolomics. Rice 1, 63-71
  78. Joseph G. Dubouzet, Atsushi Ishihara, Fumio Matsuda, Hisashi Miyagawa, Hiroyoshi Iwata, and Kyo Wakasa (2007) Integrated metabolomic and transcriptomic analyses of high-tryptophan rice expressing a mutant anthranilate synthase alpha subunit. J Exp Bot, 58(12), 3309-3321
  79. Fumio Matsuda, Kyo Wakasa, and Hisashi Miyagawa (2007) Metabolic flux analysis in plants using dynamic labeling technique: Application to tryptophan biosynthesis in cultured rice cells. Phytochemistry 68(16-18), 2290-301
  80. Atsushi Ishihara, Fumio Matsuda, and Hisashi Miyagawa (2007) Metabolomics for metabolically-manipulated plants -- Effects of tryptophan overproduction. Metabolomics, 3(3), 319-334
  81. Elmar Heinzle, Fumio Matsuda, Hisashi Miyagawa, Kyo Wakasa, and Takaaki Nishioka (2007) Estimation of metabolic fluxes, expression levels and metabolite dynamics of a secondary metabolic pathway in potato using label pulse feeding experiments combined with kinetic network modeling and simulation. Plant J. 50 (1), 176-187
  82. 草野都、峠隆之、松田史生、岡咲洋三、及川彰、斉藤和季. 2007. 「マススペクトロメトリーによる植物メタボローム解析」細胞工学別冊、最新プロテオミクス・メタボロミクス pp146-156.
  83. 松田史生 (2007) 植物代謝の「流れ」をみる 植物代謝フラックス解析研究における近年の動向と展望. 化学と生物. 45, 376-379.
  84. 松田史生、及川彰、草野都、菊地淳、斉藤和季 (2007) メタボローム解析技術の現状と展望 1.試料調製、計測技術. 化学と生物. 45, 754-760.
  85. 松田史生、及川彰、草野都、菊地淳、斉藤和季 (2007) メタボローム解析技術の現状と展望 2.データ処理技術. 化学と生物. 45, 834-842.
  86. Kyo Wakasa, Hisakazu Hasegawa, Hiroshi Nemoto, Fumio Matsuda, Haruna Miyazawa, Yuzuru Tozawa, Keiko Morino, Akira Komatsu, Tetsuya Yamada, Teruhiko Terakawa, and Hisashi Miyagawa (2006) High-level tryptophan accumulation in seeds of transgenic rice and its limited effects on agronomic traits and seed metabolite profile. J Exp Bot 57(12), 3069-3078
  87. Fumio Matsuda, Tetsuya Yamada, Haruna Miyazawa, Hisashi Miyagawa, and Kyo Wakasa (2005) Characterization of tryptophan-overproducing potato transgenic for a mutant rice anthranilate synthase alpha-subunit gene (OASA1D). Planta 222(3), 535-545
  88. Fumio Matsuda, Haruna Miyazawa, Kyo Wakasa, and Hisashi Miyagawa (2005) Quantification of indole-3-acetic Acid and amino Acid conjugates in rice by liquid chromatography-electrospray ionization-tandem mass spectrometry. Biosci. Biotechnol. Biochem. 69(4), 778-783
  89. Keiko Morino, Fumio Matsuda, Haruna Miyazawa, Akiko Sukegawa, Hisashi Miyagawa and Kyo Wakasa (2005) Metabolic profiling of tryptophan-overproducing rice calli that express a feedback-insensitive a subunit of anthranilate synthase. Plant Cell Physiol. 46(3), 514-521
  90. Fumio Matsuda, Keiko Morino, Rieko Ano, Masaki Kuzawa, Kyo Wakasa, and Hisashi Miyagawa (2005) Metabolic flux analysis of the phenylpropanoid pathway in elicitor-treated potato tuber tissue. Plant Cell Physiol. 46(3), 454-466
  91. Naoko Yoshinaga, Nobuyoshi Morigaki, Fumio Matsuda, Ritsuo Nishida, and Naoki Mori (2005) In vitro biosynthesis of volicitin in Spodoptera litura. Insect Biochem. Mol. Biol. 35(2), 175-184
  92. Yozo Okazaki, Taishi Isobe, Yoichi Iwata, Tetsuya Matsukawa, Fumio Matsuda, Hishashi Miyagawa, Atsushi Ishihara, Takaaki Nishioka and Hajime Iwamura (2004) Metabolism of avenanthramide phytoalexins in oats. Plant J. 39(4), 560-572
  93. Fumio Matsuda, Keiko Morino, Haruna Miyazawa, Masahiro Miyashita, and Hisashi Miyagawa (2004) Determination of potato glycoalkaloids using high-pressure liquid chromatography-electrospray ionizaion/mass spectrometry. Phytochem. Anal. 15(2), 121-124
  94. Fumio Matsuda, Keiko Morino, Masahiro Miyashita, and Hisashi Miyagawa (2003) Metabolic flux analysis of the phenylpropanoid pathway in wound-healing potato tuber tissue using stable isotope-labeled tracer and LC-MS spectroscopy. Plant Cell Physiol. 44(5), 510-517
  95. Fumio Matsuda, Hisashi Miyagawa and Tamio Ueno (2001) Involvement of reactive oxygen species in the induction of (S)-N-p-coumaroyloctopamine accumulation by b-1,3-glucooligosacharide elicitors in potato tuber tissues. Z. Naturforsch. 56c(3-4), 228-334
  96. Fumio Matsuda, Hisashi Miyagawa and Tamio Ueno (2000) b-1,3-Glucooligosaccharide induced activation of four enzymes responsible for N-p-coumaroyloctopamine biosynthesis in potato (Solanum tuberosum cv.) tuber tissue. Z. Naturforsch. 55c(5-6), 373-3Fumio Matsuda, Hisashi Miyagawa and Tamio Ueno (2000) Absolute structure of N-p-coumaroyloctopamine in elicitor-treated potato tuber tissue. Biosci. Biotechnol. Biochem. 64, 625-627

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